This is small batch recipe for Chocolate Gluten Free Cupcakes are made with an almond flour blend, are naturally sweetened with coconut sugar, and are dairy free. The cupcakes are incredibly moist, rich in chocolate flavor, and a great base recipe for any occasion!
Chocolate Gluten Free Cupcakes
Is there anything better than a soft, fluffy, and moist chocolate cupcake? Well, I’m sure that there is, but for the sake of this recipe post, I’ll just say these are the best gluten free chocolate cupcakes I’ve ever had! Much like their gluten counterpart – chocolate black forest cupcakes – these cupcakes are great for any occasion and any day of the week.
One of the things that makes chocolate cupcakes so wonderful is that they are a great classic recipe that can take on just about any flavor of frosting. This recipe, for example, features a strawberry butter free frosting. Chocolate and strawberry are one of the dynamic duos of flavor and the same ones I use in the small gluten free chocolate cake recipe!
For these gluten free cupcakes, there are just a few more delicious features worth highlighting:
- Rich chocolate flavor – If the title says chocolate, I want to taste chocolate! And you won’t be disappointed with the chocolate flavor in this recipe.
- Light and fluffy – A good cupcake (and cake) should be light and springy (in my opinion). That is these cupcakes.
- Super moist – I have yet to find a better word for moist, but let’s face it, do we need to? It describes perfectly what to expect when you bite into one of the cupcakes. No dry cardboard cakes here!
- You’ll never know they are gluten free – I’ve tested these with some pretty finicky tastebuds and none were able to discern that the cupcakes were gluten free. Thanks in part to the almond flour blend which yields a soft and light cake crumb.
Gluten Free, Dairy Free, Refined Sugar Free Cupcakes
- Gluten Free – The almond flour blend is also considered Paleo, which is great if you are trying to avoid grains. Which can be found in other gluten free flours.
- Dairy Free – Unless you swap the coconut milk with a dairy counterpart, these cupcakes are dairy free!
- Refined Sugar Free – Coconut sugar is a natural and unrefined sugar. In baked goods, the flavor is indiscernible. But make no mistake, it is still sugar. It just doesn’t go through the same amount of stripping and processing that white table sugar does.
With so many ‘frees’ in the recipe, you may be wondering what do these cupcakes taste like? Well, as I’ve outlined above, they taste just as you would expect and want a good chocolate cupcake to taste like. A soft cake texture with rich chocolate flavor.

Ingredient List
- Almond Flour
- Arrowroot Flour
- Coconut Flour
- Tapioca Flour
- Dutch Processed Cocoa Powder
- Coconut Sugar
- Baking Powder and Baking Soda
- Salt
- Egg
- Coconut Oil
- Coconut Milk
- Apple Cider Vinegar
- Vanilla Extract
- Hot Coffee

Helpful Gluten Free Cupcake Tips
- Use blanched almond flour – Blanched almond flour is ground finer resulting in a lighter cupcake.
- Don’t fret about the thin batter – I find a lot of cake batters – especially chocolate – are thin. And I always freak out, but then I am surprised to see how the cake baked into a super light and fluffy treat!
- Watch the bake time – In my experience, gluten free bakes take a tad longer to bake. Just keep an eye on the cupcakes and start checking at the minimum time noted. When testing for doneness, the cupcakes will be springy to the touch and a toothpick inserted in the middle will have a few crumbs.
- Store the cupcakes at room temperature – Unfrosted cupcakes store great in a covered container at room temperature. They will stay moist for about 2 days. Beyond that, they will likely start to dry out.

Recipe FAQ
In my experience, a swapping a gluten free 1:1 blend doesn’t work for my gluten free recipes. The almond flour blend and 1:1 gf flour seem to require different ratios of wet and dry ingredients to turn out correctly.
I think natural cocoa powder will work fine. Just note that your cupcakes will likely bake into a lighter color, and the chocolate flavor may not be as bold.
Granulated sugar will work as a 1:1 swap for the coconut sugar. Otherwise, I don’t have experience with sugar-free sweeteners (i.e. monk fruit or stevia), and liquid sweeteners will throw off the ratios.
Hot water will work just fine.
I do! Check out the frosting category – you’ll find vanilla, chocolate, marshmallow, and even whipped coconut cream if you want something lighter.

More Small Batch Cupcake Recipes
- Small Batch Vanilla Cupcakes
- Peach Cupcakes – Gluten Free Small Batch
- Gluten Free Vanilla Cupcakes
- Eggnog Cupcakes with Toasted Marshmallow
- Small Batch Strawberry Cupcakes

Chocolate Gluten Free Cupcakes
EQUIPMENT
INGREDIENTS
- 5 tablespoons blanched almond flour
- 2 ½ tablespoons arrowroot flour
- 1 ½ tablespoons coconut flour
- 1 ½ tablespoons tapioca flour
- 2 tablespoons unsweetened cocoa powder, Dutch process
- 7 tablespoons coconut sugar (or granulated sugar)
- ¼ teaspoon baking powder
- ⅛ teaspoon baking soda
- ⅛ teaspoon salt
- 1 large egg
- 2 tablespoons cold pressed refined coconut oil, melted
- 2 tablespoons coconut milk (or any milk)
- ¼ teaspoon apple cider vinegar (or white distilled vinegar)
- ½ teaspoon vanilla extract
- 2 tablespoons medium brew coffee, very hot
INSTRUCTIONS
- Preheat the oven to 350F degrees and adjust the oven rack to the middle position. Line a muffin/cupcake pan with 5 cupcake liners.
- In a small mixing bowl, whisk together the almond flour, arrowroot flour, coconut flour, tapioca flour, cocoa powder, coconut sugar, baking powder and soda, and salt.5 tablespoons blanched almond flour, 2 ½ tablespoons arrowroot flour, 1 ½ tablespoons coconut flour, 1 ½ tablespoons tapioca flour, 2 tablespoons unsweetened cocoa powder, Dutch process, 7 tablespoons coconut sugar, 1/4 teaspoon baking powder, 1/8 teaspoon baking soda, 1/8 teaspoon salt
- In a medium mixing bowl, add the egg, melted coconut oil, coconut milk, vinegar, and vanilla extract. Whisk until completely combined.1 large egg, 2 tablespoons cold pressed refined coconut oil, melted, 2 tablespoons coconut milk, 1/4 teaspoon apple cider vinegar, 1/2 teaspoon vanilla extract
- Sprinkle the dry ingredients over the top of the wet ingredients. Stir until no dry streaks remain. Add the hot coffee (or water), and stir until combined.2 tablespoons medium brew coffee, very hot
- Bake the cupcakes for 14 to 15 minutes, or until a toothpick inserted in the middle comes out mostly clean. Cool the cupcakes in the pan set on a wire cooling rack for 5 minutes, then transfer the cupcakes to the rack to cool completely.
RECIPE NOTES
NUTRITION ESTIMATES

about the author ...
I'm Erin and I'm all about desserts - and a little bit of butter!
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