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Gluten Free Pumpkin Cupcakes

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This small batch recipe for pumpkin cupcakes is gluten free and bursting with fall flavors!  The cupcakes are moist, delicately sweet, and made with an almond flour blend, pumpkin pie spice, and pure pumpkin puree.  Frost the cupcakes with whipped chocolate ganache frosting for a deliciously festive fall cupcake.

A single gluten free pumpkin cupcake with chocolate frosting on a fall plate.

Gluten Free Pumpkin Cupcakes

You know it is officially fall when a pumpkin cupcake recipe hits the blog!  And I’m pumped about this particular pumpkin cupcake recipe.  Not only because I was able to dust off my jar of pumpkin pie spice, but I have a gluten free counterpart to my original classic pumpkin cupcake recipe

While I have an assortment of pumpkin small batch recipes, I’ve been having a lot of fun taking some of the original recipes on and making them gluten free.  Like the classic pumpkin small batch whoopie pies, and their counterpart gluten free small batch pumpkin whoopie pies.

Tasty Details

  1. Moist – The cupcakes are incredibly moist with a fluffy and light sponge.  Thanks to a thoughtfully tested blend of gluten free flours.   
  2. Full of Flavor – These cupcakes are brimming with pumpkin flavor. 
  3. Spicy – Pumpkin spicy that is.  All the cozy flavors of cinnamon, nutmeg, ginger, and clove, and I do not skimp on the spice!  
  4. Easy – I used a couple of bowls and a fork to make these cupcakes.  So no need to break out the fancy equipment or tools!
Three pumpkin gluten free cupcakes with chocolate frosting lined up in a row on a table.

Ingredient List

  • Almond Flour
  • Arrowroot Flour
  • Coconut Flour 
  • Sweet Rice Flour 
  • Baking Powder and Baking Soda 
  • Salt
  • Pumpkin Pie Spice 
  • Pumpkin
  • Coconut Oil
  • Cane Sugar
  • Pure Maple Syrup 
  • Milk 
  • Egg 
  • Apple Cider Vinegar
  • Vanilla

Frosting flavors For Fall Cupcakes

We’ve gone over what you need to make the Gluten Free Pumpkin Cupcakes, but what about a frosting for them?!  All of the photos highlight the chocolate ganache frosting.  Because pumpkin and chocolate are a tasty combination.  I got the idea from my pumpkin roll mini cake with chocolate filling recipe!  

Helpful Tips

  • Use room temperature ingredients – This is applicable for the pumpkin (if you have it refrigerated), milk, and egg.  When ingredients are all at the same temp, they will mix and bake more evenly.
  • Let the cupcake batter rest before baking – I like to let this particular gluten free batter rest because of the sweet rice flour.  This gives the batter time to hydrate, which I find the rice flour needs.  
  • Bake the full time – Gluten free baked goods need longer to bake all the way through.  They can be deceiving though.   The touch test and toothpick test may tell you they are done minutes earlier.  However, keep the cupcakes in the oven the full time noted.  Otherwise, you can end up with dense cupcakes.
  • Cool the cupcakes completely – For two reasons:  frosting warm cupcakes is generally a bad idea, and gluten free baked goods taste better when they are completely cool.  This is my opinion, but I’ve yet to eat a warm gluten free anything and have it taste as good as when it has time to cool.
A gluten free pumpkin cupcake with chocolate frosting cut in half and placed on a small cupcake stand.

Recipe FAQ

Will a 1:1 gluten free flour work instead of the almond flour blend?

Probably not. My flour blend and the flours in the 1:1 blends are different, thus have different baking characteristics. Other ingredients would likely need to be adjusted, and I have not tested with a 1:1 to say what those would be.

Is canned pumpkin, pure pumpkin, and pumpkin puree the same thing?

Yes. As long as you read the label and the only ingredient is pumpkin. Different brands choose different names.

How do I store leftover cupcakes?

The cupcakes can be stored covered at room temperature.

A frosted gluten free pumpkin cupcake set on a wooden plate with the cupcake liner removed.

Gluten Free Pumpkin Cupcakes

GF
5 from 2 reviews
This small batch recipe for pumpkin cupcakes is gluten free and bursting with fall flavors!  The cupcakes are moist, delicately sweet, and made with an almond flour blend, pumpkin pie spice, and pure pumpkin puree.  Frost the cupcakes with whipped chocolate ganache frosting for a deliciously festive fall cupcake.
Servings5 Cupcakes
Prep15 minutes
Cook27 minutes
Total42 minutes

INGREDIENTS

Whipped Chocolate Ganache Frosting

Gluten Free Pumpkin Cupcakes

INSTRUCTIONS

Whipped Chocolate Ganach Frosting

  • Make the whipped chocolate ganache frosting ahead of time so it has time to chill. Visit the link to the frosting recipe for more frosting tips and FAQ's!
  • Chop the chocolate bar into small pieces. Place in a medium mixing bowl.
    4 ounces semi-sweet chocolate baking bar
  • Either in the microwave or on the stove-top, heat the heavy cream to just before boiling. Pour the heated cream over the chocolate and let it sit for about 3 to 5 minutes. This allows the warm cream to start to melt the chocolate.
    6 ounces heavy cream
  • Slowly whisk the ganache until all the chocolate has melted, the cream incorporated, and the ganache is smooth.
  • Place the ganache in the refrigerator for about 1 hour to allow it to cool and firm up. Note – If you try to whip the ganache right away or before it has time to cool, it probably won't whip up fluffy.
  • Cream Cheese Note – If using the cream cheese, cut it into cubes and make certain it is at room temperature. The cream cheese helps to make the frosting slightly thicker and more stable. For a thicker frosting, use 2 ounces. For a lighter frosting, use 1 ounce.
  • Powdered Sugar Note – The powdered sugar makes the frosting even more stable and creamy. If using, start with the mixer on low to avoid a powdered sugar cloud, and turn the speed up as it is incorporated.
  • Using a hand held mixer with whisk attachments, begin to whip the ganache. Add the cream cheese chunks one at a time and mix until incorporated before adding the next chunk. After mixing in the cream cheese add the salt and powdered sugar and whip until the frosting is light and fluffy.
    1/4 cup powdered sugar, 1/8 teaspoon salt, 1 to 2 ounces cream cheese, room temperature
  • Mixer Note – You can also whip the ganache in a stand mixer with the whisk attachment. For the smaller batch, a 3-quart mixing bowl will work on your KitchenAid and standard attachments.
  • The frosting is ready to use, or it can be transferred to a bowl, covered and refrigerated for 3 to 5 days. If refrigerating, it will set up firm as it chills. When ready to use, bring it to room temperature and whip again to make it light and fluffy.

Gluten Free Pumpkin Cupcakes

  • Preheat the oven to 325F degrees and adjust the oven rack to the middle position. Place 5 cupcake liners in the cupcake pan.
  • In a small mixing bowl, whisk together the almond flour, arrowroot flour, coconut flour, sweet rice flour, baking powder and soda, salt, and pumpkin pie spice.
    5 tablespoons blanched almond flour, 2 ½ tablespoons arrowroot flour, 1 ½ tablespoons coconut flour, 1 tablespoon sweet rice flour, ¼ teaspoon baking powder, ⅛ teaspoon baking soda, ⅛ teaspoon salt, 1 teaspoon pumpkin pie spice
  • In a medium mixing bowl, add the oil, sugar, and maple syrup. Stir to combine. Add the egg, milk, vinegar, vanilla, and pumpkin. Stir until completely combined and smooth.
    2 tablespoons cold pressed refined coconut oil, melted, ¼ cup organic cane sugar, 2 tablespoon pure maple syrup, 1 large egg, 2 tablespoons milk, any kind, ¼ teaspoon apple cider vinegar, ¾ teaspoon vanilla extract, ¼ cup pure canned pumpkin
  • Sprinkle the dry ingredients over the wet and stir the batter until no dry streaks remain. Equally portion the batter into the cupcake liners and let the batter rest for at least 5 minutes. This allows the batter to hydrate. TipUse a cookie scoop to portion the batter into equal amounts, and less mess!
  • Bake the cupcakes for 25 to 27 minutes, or until they are springy to the touch and a toothpick inserted in the middle comes out clean. Cool the cupcakes in the pan set on a wire cooling rack for 10 minutes, then transfer the cupcakes to rack to cool completely.
  • Allow the cupcakes to cool completely before frosting. Frost with the Whipped Chocolate Ganache Frosting (pictured), or any small batch frosting of choice. Enjoy!
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RECIPE NOTES

  • Serving Size – I have tested this recipe many times and 5 cupcakes yields the most optimal results.  You don’t want to overfill the cupcake liners, and trying to get all of the batter into 4 cupcakes will result in cupcakes that are not baked properly.
  • Pumpkin – Be sure to use canned pumpkin and not pumpkin pie filling.
  • Leftover Pumpkin – You will have leftover pumpkin, regardless of the size can you use.  Check out my other small batch pumpkin recipes to make another batch of pumpkin treats!
  • Substitutions – I have only tested this recipe with the ingredients listed.
  • Cake – This recipe can also work to make a single layer 6-inch cake.  Keep an eye on the bake time, as the cake may take a few minutes longer to bake.
  • Vinegar, Baking Powder, and Baking Soda – I use all 3 ingredients to get the desired lift and texture of a cupcake.  Gluten free bakes tend to need a little more help to rise.
  • Rest the Batter – I recommend a few minute rest time before baking to allow the batter to hydrate.  I find this especially helpful when baking with sweet rice flour.
Course: Dessert
Cuisine: American
Author: Erin Cernich

NUTRITION ESTIMATES

Calories: 492kcal | Carbohydrates: 44g | Protein: 6g | Fat: 33g | Saturated Fat: 20g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 7g | Trans Fat: 0.02g | Cholesterol: 83mg | Sodium: 217mg | Potassium: 243mg | Fiber: 4g | Sugar: 31g | Vitamin A: 2559IU | Vitamin C: 1mg | Calcium: 99mg | Iron: 2mg
Nutrition information is calculated by a third-party and should only be considered an estimate and not a guarantee.
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I'm Erin and I'm all about desserts - and a little bit of butter!

I've tested, written, and photographed hundreds of recipes on my website. Here you'll find the tastiest small batch desserts - all homemade, all simple, and all for you! Click here to learn more about me!

5 from 2 votes (2 ratings without comment)

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